Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Ush1c MGP_PahariEiJ_G0012983

.

Description

USH1 protein network component harmonin [Source:NCBI gene;Acc:110322044]

Location

Chromosome 1: 18,869,907-18,913,265 reverse strand.

PAHARI_EIJ_v1.1:LT608296.1

About this gene

This gene has 9 transcripts (splice variants), 199 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0016533.1	Ush1c-204	3079	910aa	MGP_PahariEiJ_P0016533	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0016534.1	Ush1c-205	2758	891aa	MGP_PahariEiJ_P0016534	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0016531.1	Ush1c-202	2050	548aa	MGP_PahariEiJ_P0016531	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0016536.1	Ush1c-207	1865	517aa	MGP_PahariEiJ_P0016536	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0016535.1	Ush1c-206	1700	529aa	MGP_PahariEiJ_P0016535	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0016532.1	Ush1c-203	3039	859aa	MGP_PahariEiJ_P0016532	Nonsense mediated decay	-
MGP_PahariEiJ_T0016538.1	Ush1c-209	405	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0016537.1	Ush1c-208	710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0016530.1	Ush1c-201	2294	638aa	MGP_PahariEiJ_P0016530	Unknown likely coding	-

.

Summary

.

.