Summary
- Splice variants
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Comparative Genomics
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- GO: Molecular function
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Genetic Variation
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Gene: Sccpdh MGP_PahariEiJ_G0028200

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Description

saccharopine dehydrogenase (putative) [Source:NCBI gene;Acc:110321510]

Location

Chromosome 5: 151,845,404-151,865,986 forward strand.

PAHARI_EIJ_v1.1:LT608292.1

About this gene

This gene has 6 transcripts (splice variants) and 255 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0076787.1	Sccpdh-201	1936	429aa	MGP_PahariEiJ_P0076787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0076790.1	Sccpdh-204	660	169aa	MGP_PahariEiJ_P0076790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0076791.1	Sccpdh-205	518	120aa	MGP_PahariEiJ_P0076791	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0076788.1	Sccpdh-202	1806	130aa	MGP_PahariEiJ_P0076788	Nonsense mediated decay	-
MGP_PahariEiJ_T0076789.1	Sccpdh-203	3560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0076792.1	Sccpdh-206	2922	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data