Transcript: MGP_CASTEiJ_T0059304.1

Description

staufen (RNA binding protein) homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1338864]

Gene Synonyms

5830401L18Rik, AW549911, C85792, Stau

Location

Chromosome 2: 171,298,728-171,352,645 reverse strand.

Reference strain equivalent

Stau1

About this transcript

This transcript has 12 exons, is annotated with 26 domains and features and maps to 363 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0026081.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0059306.1	-	2975	495aa	MGP_CASTEiJ_P0059306	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0059304.1	-	3568	489aa	MGP_CASTEiJ_P0059304	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17093, CCDS50800, CCDS50801, CCDS71197	A2A5R8 A2A5S3 Q9DBE7 Q9Z108 V9GX87	-
MGP_CASTEiJ_T0059308.1	-	2859	487aa	MGP_CASTEiJ_P0059308	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0059307.1	-	2839	485aa	MGP_CASTEiJ_P0059307	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0059310.1	-	1513	436aa	MGP_CASTEiJ_P0059310	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0059314.1	-	341	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_CASTEiJ_T0059305.1	-	3569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0059311.1	-	862	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0059312.1	-	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0059313.1	-	788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0059309.1	-	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,568 bps, Translation length: 489 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z108

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS17093, CCDS50800, CCDS50801, CCDS71197

Version

MGP_CASTEiJ_T0059304.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0059304.1

Summary

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Transcript: MGP_CASTEiJ_T0059304.1

Summary

About Us

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