Transcript: MGP_CASTEiJ_T0072684.1

Description

RUN and FYVE domain containing 3 [Source:MGI Symbol;Acc:MGI:106484]

Gene Synonyms

2810428M05Rik, 6330416M07Rik, AW455998, AW538594, D5Bwg0860e, Ripx, Rpipx

Location

Chromosome 5: 88,639,614-88,710,303 forward strand.

Reference strain equivalent

Rufy3

About this transcript

This transcript has 13 exons, is annotated with 2 domains and features and maps to 340 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0028819.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0072687.1	-	2180	487aa	MGP_CASTEiJ_P0072687	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0072688.1	-	4051	469aa	MGP_CASTEiJ_P0072688	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0072684.1	-	3722	525aa	MGP_CASTEiJ_P0072684	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19403, CCDS80323, CCDS80324, CCDS80325	A0A0G2JFT8 Q9D394	-
MGP_CASTEiJ_T0072685.1	-	3549	675aa	MGP_CASTEiJ_P0072685	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0072691.1	-	2081	487aa	MGP_CASTEiJ_P0072691	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0072690.1	-	2715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0072689.1	-	2338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0072692.1	-	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0072686.1	-	1080	267aa	MGP_CASTEiJ_P0072686	Unknown likely coding		-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,722 bps, Translation length: 525 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D394

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS19403, CCDS80323, CCDS80324, CCDS80325

Version

MGP_CASTEiJ_T0072684.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0072684.1

Summary

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Transcript: MGP_CASTEiJ_T0072684.1

Summary

About Us

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