Transcript: MGP_C57BL6NJ_T0061594.1

Description

structural maintenance of chromosomes 4 [Source:MGI Symbol;Acc:MGI:1917349]

Gene Synonyms

2500002A22Rik, C79747, Capc, SMC-4, Smc4l1

Location

Chromosome 3: 70,776,716-70,808,422 forward strand.

Reference strain equivalent

Smc4

About this transcript

This transcript has 24 exons and maps to 385 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0027710.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0061591.1	-	4316	1286aa	MGP_C57BL6NJ_P0061591	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17401	A0A0A6YX07 A0A0A6YXY3 D6RCX2 E9Q2X6 Q3U763 Q8CG47	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0061593.1	-	3983	1261aa	MGP_C57BL6NJ_P0061593	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0061592.1	-	1163	337aa	MGP_C57BL6NJ_P0061592	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0061594.1	-	4057	46aa	MGP_C57BL6NJ_P0061594	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0061595.1	-	784	56aa	MGP_C57BL6NJ_P0061595	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0061600.1	-	557	108aa	MGP_C57BL6NJ_P0061600	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0061597.1	-	496	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0061601.1	-	756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0061598.1	-	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0061599.1	-	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0061596.1	-	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 24, Coding exons: 1, Transcript length: 4,057 bps, Translation length: 46 residues

Version

MGP_C57BL6NJ_T0061594.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0061594.1

Summary

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Transcript: MGP_C57BL6NJ_T0061594.1

Summary

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