Transcript: MGP_C57BL6NJ_T0051449.1

Description

Berardinelli-Seip congenital lipodystrophy 2 (seipin) [Source:MGI Symbol;Acc:MGI:1298392]

Gene Synonyms

2900097C17Rik, AI046355, Gng3lg, seipin

Location

Chromosome 19: 6,252,536-6,260,572 forward strand.

Reference strain equivalent

Bscl2

About this transcript

This transcript has 10 exons and maps to 233 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0025229.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0051441.1	-	1962	443aa	MGP_C57BL6NJ_P0051441	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29551, CCDS70931	A0A0R4J225 E0CXJ2 F6US45 Q9Z2E9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0051444.1	-	1795	383aa	MGP_C57BL6NJ_P0051444	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0051443.1	-	1684	383aa	MGP_C57BL6NJ_P0051443	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0051447.1	-	1388	383aa	MGP_C57BL6NJ_P0051447	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0051446.1	-	1646	213aa	MGP_C57BL6NJ_P0051446	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0051450.1	-	685	134aa	MGP_C57BL6NJ_P0051450	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0051442.1	-	846	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0051448.1	-	3495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0051445.1	-	2806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0051449.1	-	1911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,911 bps,

Version

MGP_C57BL6NJ_T0051449.1

Type

Retained intron

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0051449.1

Summary

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Transcript: MGP_C57BL6NJ_T0051449.1

Summary

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