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Transcript: MGP_C57BL6NJ_T0037818.1

Description

patched 1 [Source:MGI Symbol;Acc:MGI:105373]

Gene Synonyms

A230106A15Rik, PTCHGN, Patched 1, Ptc, Ptc1, Ptch, mes, patched c isoform, patched eGN isoform

Location

Chromosome 13: 65,546,552-65,612,202 reverse strand.

Reference strain equivalent

Ptch1

About this transcript

This transcript has 24 exons and maps to 425 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0021058.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0037817.1-70911434aaMGP_C57BL6NJ_P0037817
 
Protein coding
CCDS26592A0A0A6YVW7 A0A0A6YVX7 A0A0A6YWC4
A0A0A6YWZ4 Q5R1U4 Q61115
Ensembl Canonical
MGP_C57BL6NJ_T0037823.1-1123326aaMGP_C57BL6NJ_P0037823
 
Protein coding
--
MGP_C57BL6NJ_T0037821.1-849174aaMGP_C57BL6NJ_P0037821
 
Protein coding
--
MGP_C57BL6NJ_T0037822.1-809174aaMGP_C57BL6NJ_P0037822
 
Protein coding
--
MGP_C57BL6NJ_T0037818.1-7654581aaMGP_C57BL6NJ_P0037818
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0037820.1-3418426aaMGP_C57BL6NJ_P0037820
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0037819.1-305No protein-
 
Retained intron
--

Summary

Statistics

Exons: 24, Coding exons: 15, Transcript length: 7,654 bps, Translation length: 581 residues

Version

MGP_C57BL6NJ_T0037818.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.