Transcript: MGP_C57BL6NJ_T0023031.1

Description

proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) [Source:MGI Symbol;Acc:MGI:1891344]

Gene Synonyms

CACP, DOL54, JCAP, MSF, SZP, lubricin

Location

Chromosome 1: 160,483,580-160,491,553 reverse strand.

Reference strain equivalent

Prg4

About this transcript

This transcript has 4 exons, is annotated with 16 domains and features and maps to 39 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0016980.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0023025.1	-	4140	1180aa	MGP_C57BL6NJ_P0023025	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0023027.1	-	3999	1133aa	MGP_C57BL6NJ_P0023027	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0023026.1	-	3594	998aa	MGP_C57BL6NJ_P0023026	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0023029.1	-	3152	998aa	MGP_C57BL6NJ_P0023029	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0023024.1	-	1869	423aa	MGP_C57BL6NJ_P0023024	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48391, CCDS48392	A0A0R4J207 E0CXA1 E0CY90 E0CZ58 E9QQ17 E9QQ18	-
MGP_C57BL6NJ_T0023028.1	-	1480	423aa	MGP_C57BL6NJ_P0023028	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0023030.1	-	577	179aa	MGP_C57BL6NJ_P0023030	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0023031.1	-	337	99aa	MGP_C57BL6NJ_P0023031	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 337 bps, Translation length: 99 residues

Version

MGP_C57BL6NJ_T0023031.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0023031.1

Summary

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Transcript: MGP_C57BL6NJ_T0023031.1

Summary

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