Transcript: MGP_129S1SvImJ_T0085645.1

Description

tripartite motif-containing 3 [Source:MGI Symbol;Acc:MGI:1860040]

Gene Synonyms

BERP1, HAC1, Hac1, Rnf22

Location

Chromosome 7: 108,865,745-108,896,610 reverse strand.

Reference strain equivalent

Trim3

About this transcript

This transcript has 12 exons, is annotated with 39 domains and features and maps to 101 oligo probes.

Gene

This transcript is a product of gene MGP_129S1SvImJ_G0032757.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_129S1SvImJ_T0085646.1	-	3016	744aa	MGP_129S1SvImJ_P0085646	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_129S1SvImJ_T0085647.1	-	2841	744aa	MGP_129S1SvImJ_P0085647	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0085645.1	-	2472	717aa	MGP_129S1SvImJ_P0085645	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21655, CCDS72012	D3YUY7 D3Z7V9 Q3TDT0 Q9R1R2	-
MGP_129S1SvImJ_T0085651.1	-	780	198aa	MGP_129S1SvImJ_P0085651	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0085653.1	-	692	121aa	MGP_129S1SvImJ_P0085653	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0085652.1	-	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_129S1SvImJ_T0085650.1	-	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_129S1SvImJ_T0085649.1	-	697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_129S1SvImJ_T0085648.1	-	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,472 bps, Translation length: 717 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9R1R2

CCDS

This transcript is a member of the Mouse 129S1/SvImJ CCDS set: CCDS21655, CCDS72012

Version

MGP_129S1SvImJ_T0085645.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_129S1SvImJ_T0085645.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_129S1SvImJ_T0085645.1

Summary

About Us

Get help

Our sister sites

Follow us