Transcript: MGP_129S1SvImJ_T0045071.1

Description

synaptojanin 1 [Source:MGI Symbol;Acc:MGI:1354961]

Gene Synonyms

A930006D20Rik, AA675315, mKIAA0910

Location

Chromosome 16: 91,933,798-91,991,441 reverse strand.

Reference strain equivalent

Synj1

About this transcript

This transcript has 19 exons and maps to 211 oligo probes.

Gene

This transcript is a product of gene MGP_129S1SvImJ_G0023032.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_129S1SvImJ_T0045064.1	-	7089	1607aa	MGP_129S1SvImJ_P0045064	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49906, CCDS49907	D3Z1M7 D3Z656 E9Q7S0 F6VSS8 F6XIX0 F7BQW7 F7CD11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_129S1SvImJ_T0045065.1	-	7043	1309aa	MGP_129S1SvImJ_P0045065	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045067.1	-	4771	1323aa	MGP_129S1SvImJ_P0045067	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045066.1	-	3499	188aa	MGP_129S1SvImJ_P0045066	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045072.1	-	2218	693aa	MGP_129S1SvImJ_P0045072	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045069.1	-	547	103aa	MGP_129S1SvImJ_P0045069	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045070.1	-	354	117aa	MGP_129S1SvImJ_P0045070	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_129S1SvImJ_T0045068.1	-	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_129S1SvImJ_T0045071.1	-	2772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_129S1SvImJ_T0045073.1	-	976	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 19, Coding exons: 0, Transcript length: 2,772 bps,

Version

MGP_129S1SvImJ_T0045071.1

Type

Retained intron

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_129S1SvImJ_T0045071.1

Summary

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Transcript: MGP_129S1SvImJ_T0045071.1

Summary

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