Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]

Synonyms

Sema Y, Semay

Location
About this transcript

This transcript has 20 exons, is annotated with 21 domains and features, is associated with 31 variations and maps to 331 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Sema6c-202ENSMUST00000090823.74029963aaENSMUSP00000088333
 
Protein coding
CCDS71289E9Q613 NM_001272024
NP_001258953
TSL:1GENCODE basicAPPRIS ALT1
Sema6c-201ENSMUST00000090821.93933931aaENSMUSP00000088331
 
Protein coding
CCDS17604Q9WTM3 NR_073551
TSL:5GENCODE basicAPPRIS P3
Sema6c-213ENSMUST00000168321.73553963aaENSMUSP00000129081
 
Protein coding
CCDS71289E9Q613 -TSL:1GENCODE basicAPPRIS ALT1
Sema6c-214ENSMUST00000202315.22843931aaENSMUSP00000144039
 
Protein coding
CCDS17604Q9WTM3 NM_011351
NP_035481
TSL:1GENCODE basicAPPRIS P3
Sema6c-203ENSMUST00000107217.53595923aaENSMUSP00000102835
 
Protein coding
-G5E8N4 -TSL:1GENCODE basic
Sema6c-208ENSMUST00000131742.754929aaENSMUSP00000142525
 
Protein coding
-A0A0G2JDV7 -CDS 3' incompleteTSL:2
Sema6c-212ENSMUST00000142449.83936124aaENSMUSP00000123457
 
Nonsense mediated decay
-E9Q4N1 NR_073549
NR_073550
TSL:1
Sema6c-215ENSMUST00000204709.23562124aaENSMUSP00000144702
 
Nonsense mediated decay
-E9Q4N1 -TSL:1
Sema6c-207ENSMUST00000131620.771680aaENSMUSP00000138154
 
Nonsense mediated decay
-S4R1B4 -TSL:5
Sema6c-205ENSMUST00000130662.1890No protein-
 
Processed transcript
---TSL:2
Sema6c-211ENSMUST00000142306.1450No protein-
 
Processed transcript
---TSL:2
Sema6c-206ENSMUST00000130814.7347No protein-
 
Processed transcript
---TSL:2
Sema6c-209ENSMUST00000134125.75095No protein-
 
Retained intron
---TSL:2
Sema6c-204ENSMUST00000126597.1814No protein-
 
Retained intron
---TSL:3
Sema6c-210ENSMUST00000141607.7788No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 20, Coding exons: 17, Transcript length: 3,933 bps, Translation length: 931 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17604

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WTM3

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000090821.9

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays