Description

collagen, type IV, alpha 1 [Source:MGI Symbol;Acc:MGI:88454]

Synonyms

alpha1(IV) collagen, Del(8)Bru44H, Bru, Del(8)44H, Raw, Col4a-1, Svc

Location
About this transcript

This transcript has 52 exons, is annotated with 68 domains and features, is associated with 61 variations and maps to 532 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col4a1-201ENSMUST00000033898.966151669aaENSMUSP00000033898
 
Protein coding
CCDS40219P02463 NM_009931
NP_034061
TSL:1GENCODE basicAPPRIS P1
Col4a1-206ENSMUST00000209598.11170328aaENSMUSP00000147459
 
Protein coding
-A0A1B0GRC0 -CDS 5' incompleteTSL:5
Col4a1-203ENSMUST00000208095.1545133aaENSMUSP00000146554
 
Protein coding
-A0A140LHU8 -CDS 3' incompleteTSL:3
Col4a1-208ENSMUST00000209735.164871562aaENSMUSP00000147951
 
Nonsense mediated decay
-A0A1B0GSI7 NR_133670
TSL:2
Col4a1-207ENSMUST00000209661.1618126aaENSMUSP00000148226
 
Nonsense mediated decay
-A0A1B0GT69 -CDS 5' incompleteTSL:5
Col4a1-204ENSMUST00000208386.1416No protein-
 
Processed transcript
---TSL:3
Col4a1-202ENSMUST00000130488.2676No protein-
 
Retained intron
---TSL:5
Col4a1-205ENSMUST00000209000.1604No protein-
 
Retained intron
---TSL:NA
Statistics

Exons: 52, Coding exons: 52, Transcript length: 6,615 bps, Translation length: 1,669 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40219

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02463

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000033898.9

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays