Transcript: ENSMUST00000233327.2 Vmn2r59-202

Description

vomeronasal 2, receptor 59 [Source:MGI Symbol;Acc:MGI:3643747]

Gene Synonyms

EG628444

Location

Chromosome 7: 41,660,708-41,708,447 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 4124 variant alleles and maps to 230 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000092032.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168489.3	Vmn2r59-201	3148	865aa	ENSMUSP00000131856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52214	E9PUT5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233456.2	Vmn2r59-204	8021	592aa	ENSMUSP00000156689.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCU2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000233327.2	Vmn2r59-202	3655	85aa	ENSMUSP00000156474.2	Nonsense mediated decay		A0A3B2WCE4	-
ENSMUST00000233351.2	Vmn2r59-203	15057	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 3,655 bps, Translation length: 85 residues

Version

ENSMUST00000233327.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000233327.2 Vmn2r59-202

Summary

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Transcript: ENSMUST00000233327.2 Vmn2r59-202

Summary

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