Transcript: ENSMUST00000164856.3 Vmn2r116-201

Description

vomeronasal 2, receptor 116 [Source:MGI Symbol;Acc:MGI:3646674]

Gene Synonyms

EG619697, V2Rp5

Location

Chromosome 17: 23,603,578-23,623,396 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 44 domains and features, is associated with 1070 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000090966.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164856.3	Vmn2r116-201	5328	856aa	ENSMUSP00000128106.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50009	E9Q6I0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234564.2	Vmn2r116-205	5208	816aa	ENSMUSP00000157066.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EG82	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234010.2	Vmn2r116-202	5100	780aa	ENSMUSP00000157271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EH09	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234872.2	Vmn2r116-207	5610	81aa	ENSMUSP00000157380.2	Nonsense mediated decay		A0A3Q4EIK7	-
ENSMUST00000234839.2	Vmn2r116-206	5218	69aa	ENSMUSP00000157298.2	Nonsense mediated decay		A0A3Q4EC64	-
ENSMUST00000234055.2	Vmn2r116-203	5039	78aa	ENSMUSP00000157330.2	Nonsense mediated decay		A0A3Q4EGR6	-
ENSMUST00000235122.2	Vmn2r116-208	6672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234193.2	Vmn2r116-204	6240	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,328 bps, Translation length: 856 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9Q6I0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50009

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000164856.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000164856.3 Vmn2r116-201

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Transcript: ENSMUST00000164856.3 Vmn2r116-201

Summary

About Us

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