Description

RIKEN cDNA 2700094K13 gene [Source:MGI Symbol;Acc:MGI:1919907]

Location
About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 1 variation and maps to 16 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
2700094K13Rik-003ENSMUST00000102646783116aaENSMUSP00000099706
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16187Q3UQA7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

2700094K13Rik-001ENSMUST00000117299747116aaENSMUSP00000112635
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16187Q3UQA7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

2700094K13Rik-002ENSMUST00000102647654116aaENSMUSP00000099707
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16187Q3UQA7 NM_001033166
NM_001037279
NP_001028338
NP_001032356
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

2700094K13Rik-005ENSMUST00000189636499123aaENSMUSP00000139830
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WPM0 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
2700094K13Rik-006ENSMUST00000189988390101aaENSMUSP00000139492
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WNU1 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
2700094K13Rik-004ENSMUST00000154179599No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 4 Coding exons: 3 Transcript length: 654 bps Translation length: 116 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16187

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UQA7

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000102647.6

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays