Transcript: ENSMUST00000233359.2 Vmn2r121-202

Description

vomeronasal 2, receptor 121 [Source:MGI Symbol;Acc:MGI:3643045]

Gene Synonyms

EG625699

Location

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 3023 variant alleles and maps to 305 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000094491.5	Vmn2r121-201	5482	847aa	ENSMUSP00000092067.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53179	A2BE32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233504.2	Vmn2r121-203	5638	98aa	ENSMUSP00000156535.2	Nonsense mediated decay		A0A3B2WAV1	-
ENSMUST00000233359.2	Vmn2r121-202	5199	89aa	ENSMUSP00000156789.2	Nonsense mediated decay		A0A3B2W7Z9	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 5,199 bps, Translation length: 89 residues

Version

ENSMUST00000233359.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only