Transcript: ENSMUST00000249228.1 Ct55-202

Description

cancer/testis antigen 55 [Source:MGI Symbol;Acc:MGI:1922263]

Gene Synonyms

4930502E18Rik, Ct55

Location

Chromosome X: 52,718,510-52,740,410 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 1720 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000055555.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000069209.2	Ct55-201	1427	236aa	ENSMUSP00000064619.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30136	Q14BQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000249228.1	Ct55-202	1299	185aa	ENSMUSP00000159611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000249229.1	Ct55-203	1374	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,299 bps, Translation length: 185 residues

Version

ENSMUST00000249228.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000249228.1 Ct55-202

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Transcript: ENSMUST00000249228.1 Ct55-202

Summary

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