Transcript: ENSMUST00000053986.9 Lingo3-201

Description

leucine rich repeat and Ig domain containing 3 [Source:MGI Symbol;Acc:MGI:3609246]

Gene Synonyms

LERN2

Location

Chromosome 10: 80,668,635-80,679,873 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 34 domains and features, is associated with 858 variant alleles and maps to 135 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051067.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000053986.9	Lingo3-201	3439	589aa	ENSMUSP00000054960.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24035	Q6GQU6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000219924.2	Lingo3-202	271	34aa	ENSMUSP00000151329.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P6P2	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,439 bps, Translation length: 589 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6GQU6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24035

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000053986.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000053986.9 Lingo3-201

Summary

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Transcript: ENSMUST00000053986.9 Lingo3-201

Summary

About Us

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