cysteine-rich transmembrane module containing 1 [Source:MGI Symbol;Acc:MGI:1913310]
0610010O12Rik
Chromosome 18: 36,481,827-36,526,423 forward strand.
This transcript has 3 exons, is annotated with 5 domains and features, is associated with 2285 variant alleles and maps to 82 oligo probes.
This transcript is a product of gene ENSMUSG00000046727.14 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENSMUST00000236593.2 | Cystm1-211 | 1050 | 106aa | ENSMUSP00000158346.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS37770 | D3YWV2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSMUST00000236374.2 | Cystm1-210 | 1505 | 104aa | ENSMUSP00000157423.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8K353 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, | |
| ENSMUST00000237375.2 | Cystm1-213 | 1385 | 104aa | ENSMUSP00000158042.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8K353 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, | |
| ENSMUST00000235403.2 | Cystm1-206 | 1122 | 104aa | ENSMUSP00000157550.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8K353 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, | |
| ENSMUST00000235864.2 | Cystm1-208 | 1101 | 104aa | ENSMUSP00000158380.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8K353 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, | |
| ENSMUST00000139727.3 | Cystm1-202 | 1026 | 106aa | ENSMUSP00000115138.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS37770 | D3YWV2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, |
| ENSMUST00000050584.10 | Cystm1-201 | 831 | 104aa | ENSMUSP00000051708.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8K353 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3,TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000152804.9 | Cystm1-205 | 445 | 106aa | ENSMUSP00000129683.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS37770 | D3YWV2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, |
| ENSMUST00000144158.2 | Cystm1-203 | 369 | 84aa | ENSMUSP00000114199.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3YVS7 | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENSMUST00000237329.2 | Cystm1-212 | 1162 | 76aa | ENSMUSP00000157821.2 | Nonsense mediated decay | A0A494BBD6 | - | |
| ENSMUST00000236024.2 | Cystm1-209 | 1149 | 76aa | ENSMUSP00000158471.2 | Nonsense mediated decay | A0A494BBD6 | - | |
| ENSMUST00000235576.2 | Cystm1-207 | 872 | 76aa | ENSMUSP00000158229.2 | Nonsense mediated decay | A0A494BBD6 | - | |
| ENSMUST00000145439.2 | Cystm1-204 | 1795 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, |