Transcript: ENSMUST00000163199.5 Nme9-202

Description

NME/NM23 family member 9 [Source:MGI Symbol;Acc:MGI:4359686]

Gene Synonyms

Txndc6

Location

Chromosome 9: 99,333,528-99,356,707 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 2256 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046242.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000163199.5	Nme9-202	1196	329aa	ENSMUSP00000150820.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1SUL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000056103.6	Nme9-201	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,196 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1L1SUL6

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000163199.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000163199.5 Nme9-202

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Transcript: ENSMUST00000163199.5 Nme9-202

Summary

About Us

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