Description

transmembrane and coiled-coil domains 4 [Source:MGI Symbol;Acc:MGI:1924306]

About this transcript

This transcript has 17 exons, is annotated with 2 domains and features, is associated with 31 variations and maps to 36 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Tmco4-002ENSMUST000000509493318631aaENSMUSP00000059320
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS18837Q91WU4 NM_029857
NP_001292352
NP_084133
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Tmco4-001ENSMUST000000430422922631aaENSMUSP00000041388
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS18837Q91WU4 NP_001292352
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Tmco4-004ENSMUST0000012363666056aaENSMUSP00000122817
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2ALL4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tmco4-003ENSMUST000001248351992No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 17 Coding exons: 13 Transcript length: 3,318 bps Translation length: 631 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18837

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91WU4

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000050949.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays