Transcript: ENSMUST00000036540.12 Fam117b-201

Description

family with sequence similarity 117, member B [Source:MGI Symbol;Acc:MGI:1920000]

Gene Synonyms

2810425F24Rik, 6330416D14Rik, Als2cr13

Location

Chromosome 1: 59,952,165-60,024,505 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 25 domains and features, is associated with 3191 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000041040.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000036540.12	Fam117b-201	5532	584aa	ENSMUSP00000041671.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14986	Q3U3E2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000151630.2	Fam117b-202	418	84aa	ENSMUSP00000138042.2	Nonsense mediated decay		M0QWW4	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000189790.2	Fam117b-203	1758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 5,532 bps, Translation length: 584 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3U3E2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS14986

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000036540.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000036540.12 Fam117b-201

Summary

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Transcript: ENSMUST00000036540.12 Fam117b-201

Summary

About Us

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