Transcript: ENSMUST00000236544.2 Notch3-203

Description

notch 3 [Source:MGI Symbol;Acc:MGI:99460]

Gene Synonyms

N3, hpbk

Location

Chromosome 17: 32,341,814-32,352,739 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1467 variant alleles and maps to 36 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038146.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000087723.5	Notch3-201	8016	2318aa	ENSMUSP00000085016.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28614	Q61982	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235816.2	Notch3-202	717	239aa	ENSMUSP00000158243.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAZ6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000236544.2	Notch3-203	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 645 bps,

Version

ENSMUST00000236544.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000236544.2 Notch3-203

Summary

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Transcript: ENSMUST00000236544.2 Notch3-203

Summary

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