Transcript: ENSMUST00000234001.2 Camk4-202

Description

calcium/calmodulin-dependent protein kinase IV [Source:MGI Symbol;Acc:MGI:88258]

Gene Synonyms

A430110E23Rik, Ca2+/calmodulin-dependent protein kinase type IV/Gr, CaMKIV, CaMKIV/Gr, D18Bwg0362e

Location

Chromosome 18: 33,071,444-33,211,099 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 6400 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038128.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000042868.6	Camk4-201	2717	469aa	ENSMUSP00000046539.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29122	Q8BGR3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234001.2	Camk4-202	526	67aa	ENSMUSP00000157088.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EG96	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234205.2	Camk4-203	1868	469aa	ENSMUSP00000157012.2	Nonsense mediated decay	CCDS29122	Q8BGR3	-
ENSMUST00000234654.2	Camk4-204	1829	469aa	ENSMUSP00000157216.2	Nonsense mediated decay	CCDS29122	Q8BGR3	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 526 bps, Translation length: 67 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000234001.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

Transcript: ENSMUST00000234001.2 Camk4-202

Summary

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Transcript: ENSMUST00000234001.2 Camk4-202

Summary

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