Transcript: ENSMUST00000234421.2 Socs5-202

Description

suppressor of cytokine signaling 5 [Source:MGI Symbol;Acc:MGI:2385459]

Gene Synonyms

1810018L08Rik, Cish5, SOCS-5

Location

Chromosome 17: 87,415,286-87,430,418 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1352 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037104.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000041369.8	Socs5-201	4648	536aa	ENSMUSP00000038591.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29014	O54928	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234803.2	Socs5-203	978	203aa	ENSMUSP00000157177.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UXZ1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234421.2	Socs5-202	2019	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,019 bps,

Version

ENSMUST00000234421.2

Type

Protein coding CDS not defined

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000234421.2 Socs5-202

Summary

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Transcript: ENSMUST00000234421.2 Socs5-202

Summary

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