Transcript: ENSMUST00000034465.9 2810004N23Rik-201

Description

RIKEN cDNA 2810004N23 gene [Source:MGI Symbol;Acc:MGI:1913773]

Gene Synonyms

Ayu21-55, Gt(Ayu21)55Imeg, GtAyu21-55

Location

Chromosome 8: 125,565,227-125,589,859 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 1432 variant alleles and maps to 223 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031984.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034465.9	2810004N23Rik-201	2340	281aa	ENSMUSP00000034465.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22775	Q8CIL4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000211971.2	2810004N23Rik-202	2081	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000212808.2	2810004N23Rik-203	3663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,340 bps, Translation length: 281 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CIL4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22775

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000034465.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000034465.9 2810004N23Rik-201

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Transcript: ENSMUST00000034465.9 2810004N23Rik-201

Summary

About Us

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