Transcript: ENSMUST00000119654.2 Pdpn-202

Description

podoplanin [Source:MGI Symbol;Acc:MGI:103098]

Gene Synonyms

Gp38, OTS-8, PA2.26, RANDAM-2, T1a, T1alpha

Location

Chromosome 4: 142,994,916-143,026,033 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 3222 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028583.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030317.14	Pdpn-201	1817	172aa	ENSMUSP00000030317.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38943	Q62011	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000119654.2	Pdpn-202	762	159aa	ENSMUSP00000113776.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71511	A8Y5F6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 762 bps, Translation length: 159 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS71511

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000119654.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000119654.2 Pdpn-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000119654.2 Pdpn-202

Summary

About Us

Get help

Our sister sites

Follow us