Transcript: ENSMUST00000026820.11 Slc28a1-201

Description

solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 [Source:MGI Symbol;Acc:MGI:3605073]

Gene Synonyms

Cnt1

Location

Chromosome 7: 80,764,547-80,820,164 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 4330 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025726.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000119083.2	Slc28a1-202	2899	648aa	ENSMUSP00000112421.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21402	E9PXX9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000026820.11	Slc28a1-201	2846	648aa	ENSMUSP00000026820.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21402	E9PXX9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,846 bps, Translation length: 648 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9PXX9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS21402

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000026820.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000026820.11 Slc28a1-201

Summary

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Transcript: ENSMUST00000026820.11 Slc28a1-201

Summary

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