Transcript: ENSMUST00000237039.2 Scd2-202

Description

stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]

Gene Synonyms

Scd-2

Location

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 984 variant alleles and maps to 155 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000026221.7	Scd2-201	5455	358aa	ENSMUSP00000026221.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29848	P13011	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237039.2	Scd2-202	2166	215aa	ENSMUSP00000158244.2	Nonsense mediated decay		A0A494BAV5	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 2,166 bps, Translation length: 215 residues

Version

ENSMUST00000237039.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only