Transcript: ENSMUST00000236199.2 Trpm6-202

Description

transient receptor potential cation channel, subfamily M, member 6 [Source:MGI Symbol;Acc:MGI:2675603]

Gene Synonyms

CHAK2

Location

Chromosome 19: 18,727,355-18,869,704 forward strand.

About this transcript

This transcript has 39 exons, is annotated with 1 domain and feature, is associated with 9136 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024727.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040489.9	Trpm6-201	6509	2028aa	ENSMUSP00000037443.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29691	A0A1W5LU38 Q8CIR4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237020.2	Trpm6-203	1618	525aa	ENSMUSP00000158233.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAU5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000236199.2	Trpm6-202	6290	894aa	ENSMUSP00000157823.2	Nonsense mediated decay		A0A494B9V5	-
ENSMUST00000237623.2	Trpm6-204	3548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 39, Coding exons: 21, Transcript length: 6,290 bps, Translation length: 894 residues

Version

ENSMUST00000236199.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000236199.2 Trpm6-202

Summary

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Transcript: ENSMUST00000236199.2 Trpm6-202

Summary

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