Transcript: ENSMUST00000025217.11 Hspa9-201

Description

heat shock protein 9 [Source:MGI Symbol;Acc:MGI:96245]

Gene Synonyms

C3H-specific antigen, CSA, GRP75, Hsc74, Hsp74, Hsp74a, Hspa9a, PBP74, mortalin, mot-2, mthsp70

Location

Chromosome 18: 35,070,467-35,087,410 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 34 domains and features, is associated with 1280 variant alleles and maps to 406 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024359.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025217.11	Hspa9-201	3049	679aa	ENSMUSP00000025217.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29138	P38647	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236908.2	Hspa9-203	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237399.2	Hspa9-205	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235244.2	Hspa9-202	504	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237289.2	Hspa9-204	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,049 bps, Translation length: 679 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P38647

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29138

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025217.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000025217.11 Hspa9-201

Summary

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Transcript: ENSMUST00000025217.11 Hspa9-201

Summary

About Us

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