Transcript: ENSMUST00000235029.2 2700062C07Rik-205

Description

RIKEN cDNA 2700062C07 gene [Source:MGI Symbol;Acc:MGI:1915296]

Location

Chromosome 18: 24,603,907-24,610,855 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 754 variant alleles and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024273.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000097646.5	2700062C07Rik-201	1065	217aa	ENSMUSP00000095251.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29101	Q5XFZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235029.2	2700062C07Rik-205	1146	85aa	ENSMUSP00000157335.2	Nonsense mediated decay		A0A3Q4EGR9	-
ENSMUST00000234303.2	2700062C07Rik-202	356	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234559.2	2700062C07Rik-203	1023	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234955.2	2700062C07Rik-204	458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 1,146 bps, Translation length: 85 residues

Version

ENSMUST00000235029.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000235029.2 2700062C07Rik-205

Summary

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Transcript: ENSMUST00000235029.2 2700062C07Rik-205

Summary

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