Transcript: ENSMUST00000233371.2 Cebpz-203

Description

CCAAT/enhancer binding protein zeta [Source:MGI Symbol;Acc:MGI:109386]

Gene Synonyms

CBF2, Cbf, Cebpa-rs1

Location

Chromosome 17: 79,229,608-79,230,270 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 621 variant alleles and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024081.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024885.10	Cebpz-201	4070	1052aa	ENSMUSP00000024885.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28981	A0A0R4J046	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233484.2	Cebpz-204	2920	461aa	ENSMUSP00000156479.2	Nonsense mediated decay		A0A3B2WCE8	-
ENSMUST00000232899.2	Cebpz-202	530	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000233371.2	Cebpz-203	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233595.2	Cebpz-205	454	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 464 bps,

Version

ENSMUST00000233371.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000233371.2 Cebpz-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000233371.2 Cebpz-203

Summary

About Us

Get help

Our sister sites

Follow us