Transcript: ENSMUST00000233507.2 Slc5a7-202

Description

solute carrier family 5 (choline transporter), member 7 [Source:MGI Symbol;Acc:MGI:1927126]

Gene Synonyms

CHT1

Location

Chromosome 17: 54,580,622-54,586,232 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 960 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023945.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095712.5	Slc5a7-201	5180	580aa	ENSMUSP00000093379.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28885	Q8BGY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233758.2	Slc5a7-203	309	34aa	ENSMUSP00000156430.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WAN5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233507.2	Slc5a7-202	4084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 4,084 bps,

Version

ENSMUST00000233507.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000233507.2 Slc5a7-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000233507.2 Slc5a7-202

Summary

About Us

Get help

Our sister sites

Follow us