Transcript: ENSMUST00000231153.2 Nr4a1-204

Description

nuclear receptor subfamily 4, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352454]

Gene Synonyms

GFRP1, Gfrp, Hbr-1, Hbr1, Hmr, N10, NGFI-B, NP10, Nur77, TIS1, TR3

Location

Chromosome 15: 101,170,742-101,171,728 forward strand.

About this transcript

This transcript has 2 exons, is associated with 490 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023034.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000228985.2	Nr4a1-202	2553	601aa	ENSMUSP00000155225.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27848	P12813 Q545Q1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000023779.8	Nr4a1-201	2477	601aa	ENSMUSP00000023779.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27848	P12813 Q545Q1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230814.2	Nr4a1-203	344	13aa	ENSMUSP00000155056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VJZ1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231153.2	Nr4a1-204	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 893 bps,

Version

ENSMUST00000231153.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000231153.2 Nr4a1-204

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Transcript: ENSMUST00000231153.2 Nr4a1-204

Summary

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