Description

SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 21 variations and maps to 20 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Slamf6-001ENSMUST000001713302485331aaENSMUSP00000130610
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15504Q18PG5 Q9ET39 NM_030710
NP_109635
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-002ENSMUST000001956565729351aaENSMUSP00000141448
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q18PJ0 Q9ET39 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-003ENSMUST00000194561984327aaENSMUSP00000141944
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6ESQ1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-006ENSMUST0000019418234655aaENSMUSP00000142242
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY21 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slamf6-007ENSMUST00000195206444No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Slamf6-005ENSMUST000001933112920No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Slamf6-004ENSMUST00000194924998No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 8 Coding exons: 8 Transcript length: 2,485 bps Translation length: 331 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15504

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ET39

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENSMUST00000171330.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays