Description

SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]

Gene

This transcript is a product of gene ENSMUSG00000015314

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Slamf6-001ENSMUST000001713302485331 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15504Q18PG5 Q9ET39 NM_030710
NP_109635
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Slamf6-002ENSMUST000001956565729351 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q18PJ0 Q8C9E6 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Slamf6-003ENSMUST00000194561984327 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6ESQ1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Slamf6-006ENSMUST0000019418234655 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slamf6-007ENSMUST00000195206444No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
Slamf6-005ENSMUST000001933112920No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Slamf6-004ENSMUST00000194924998No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 8 Coding exons: 8 Transcript length: 2,485 bps Translation length: 331 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15504

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ET39

Transcript Support Level

1

Ensembl version

ENSMUST00000171330.2

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays