Transcript: ENSMUST00000233325.2 Chaf1a-203

Description

chromatin assembly factor 1, subunit A (p150) [Source:MGI Symbol;Acc:MGI:1351331]

Gene Synonyms

CAF-1, p150

Location

Chromosome 17: 56,353,814-56,379,289 forward strand.

About this transcript

This transcript has 11 exons, is associated with 1601 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000002835.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002914.10	Chaf1a-201	5535	911aa	ENSMUSP00000002914.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28892	Q9QWF0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232828.2	Chaf1a-202	726	226aa	ENSMUSP00000156798.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WD19	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000233325.2	Chaf1a-203	7698	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 7,698 bps,

Version

ENSMUST00000233325.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000233325.2 Chaf1a-203

Summary

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Transcript: ENSMUST00000233325.2 Chaf1a-203

Summary

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