Description

paired-like homeodomain transcription factor 3 [Source:MGI Symbol;Acc:MGI:1100498]

Location
INSDC coordinates

chromosome:GRCm38:CM001012.2:46135685:46148326:1

About this gene

This gene has 3 transcripts (splice variants), 58 orthologues, 12 paralogues, is a member of 1 Ensembl protein family and is associated with 94 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Pitx3-001ENSMUST000000262591380302aaENSMUSP00000026259
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29872O35160 NM_008852
NP_032878
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pitx3-002ENSMUST0000017297132691aaENSMUSP00000134563
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UZN3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Pitx3-003ENSMUST00000172980418No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays