Description

tocopherol (alpha) transfer protein [Source:MGI Symbol;Acc:MGI:1354168]

Location
INSDC coordinates

chromosome:GRCm38:CM000997.2:20007938:20030785:1

About this gene

This gene has 4 transcripts (splice variants), 78 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ttpa-201ENSMUST000000982443053278aaENSMUSP00000095845
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17995Q499J3 Q8BWP5 NM_015767
NP_056582
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ttpa-001ENSMUST000001176323123262aaENSMUSP00000113026
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AIT6 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ttpa-002ENSMUST000001214912862209aaENSMUSP00000113966
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A8Y5N9 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ttpa-003ENSMUST0000012579943691aaENSMUSP00000117031
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A8Y5P0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays