Description

plexin B1 [Source:MGI Symbol;Acc:MGI:2154238]

INSDC coordinates

chromosome:GRCm38:CM001002.2:109095389:109119917:1

About this gene

This gene has 7 transcripts (splice variants), 73 orthologues, 8 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Plxnb1-001ENSMUST0000007209386492119aaENSMUSP00000071966
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23546Q8CJH3 NM_172775
NP_766363
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Plxnb1-004ENSMUST00000192988799266aaENSMUSP00000142431
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Plxnb1-002ENSMUST00000131462731140aaENSMUSP00000115265
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUD0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Plxnb1-003ENSMUST00000130366585140aaENSMUSP00000114358
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUD0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Plxnb1-006ENSMUST00000192117737No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Plxnb1-005ENSMUST00000194734729No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Plxnb1-007ENSMUST00000195364651No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays