Description

protocadherin 10 [Source:MGI Symbol;Acc:MGI:1338042]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:45378398:45435623:1

About this gene

This gene has 5 transcripts (splice variants), 24 orthologues, 32 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Pcdh10-003ENSMUST0000017069582341040aaENSMUSP00000132769
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50902Q925I8 NM_001098171
NP_001091641
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pcdh10-002ENSMUST0000017155472731047aaENSMUSP00000131600
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50901E9PX28 NM_001098172
NP_001091642
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P4

PRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pcdh10-001ENSMUST0000016612670811057aaENSMUSP00000131073
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50903E9PXQ7 NM_001098170
NP_001091640
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Pcdh10-004ENSMUST000001932524638896aaENSMUSP00000141529
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6P0A6 NM_011043
NP_035173
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pcdh10-005ENSMUST00000195655634No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Gene-based displays