Description

protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]

INSDC coordinates

chromosome:GRCm38:CM001013.2:120290259:120910619:1

Transcripts

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Pcdh11x-001ENSMUST0000011335886071320 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS72426B1AZR7 B5AK95 Q2TJH6
NM_001271810
NP_001258739
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Pcdh11x-007ENSMUST0000019267790971338 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5AK95 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Pcdh11x-006ENSMUST0000019389953941026 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5AK95 Q2TJH5 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Pcdh11x-003ENSMUST0000011336444541338 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5AK95 NM_001271809
NP_001258738
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Pcdh11x-201ENSMUST0000005023944421334 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5AK95 E9Q622 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Pcdh11x-005ENSMUST000001916531491496 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q2TJH7 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Pcdh11x-004ENSMUST0000019508844021128 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0JNT1 B5AK95 Q2TJH8
-
Pcdh11x-002ENSMUST000001552231635304 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q2TJH9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Pcdh11x-008ENSMUST000001929772145No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays