Description

apolipoprotein C-III [Source:MGI Symbol;Acc:MGI:88055]

Location
INSDC coordinates

chromosome:GRCm38:CM001002.2:46232933:46235636:1

About this gene

This gene has 4 transcripts (splice variants), 36 orthologues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Apoc3-001ENSMUST0000003458652699aaENSMUSP00000034586
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23141-NM_023114
NP_001276685
NP_075603
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Apoc3-002ENSMUST0000011864945399aaENSMUSP00000113058
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23141-NP_001276685
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Apoc3-003ENSMUST00000121916709137aaENSMUSP00000113126
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9QP56 NP_001276684
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Apoc3-004ENSMUST0000014567232353aaENSMUSP00000115025
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YXN8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays