Description

ephrin A1 [Source:MGI Symbol;Acc:MGI:103236]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:89271733:89281142:1

About this gene

This gene has 3 transcripts (splice variants), 60 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 4 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Efna1-002ENSMUST000001185871632142aaENSMUSP00000112904
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50961D3YTT5 NM_001162425
NP_001155897
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Efna1-001ENSMUST000000295661480205aaENSMUSP00000029566
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17501P52793 NM_010107
NP_034237
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Efna1-003ENSMUST000001188601403183aaENSMUSP00000113098
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z7A6 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays