Description

short stature homeobox 2 [Source:MGI Symbol;Acc:MGI:1201673]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:66971727:66981771:1

About this gene

This gene has 5 transcripts (splice variants), 60 orthologues, 12 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Shox2-001ENSMUST000000294223079331aaENSMUSP00000029422
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17393P70390 NM_013665
NP_038693
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Shox2-002ENSMUST000001620982645240aaENSMUSP00000123838
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3UM84 NM_001302357
NM_001302358
NP_001289286
NP_001289287
CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Shox2-004ENSMUST000001620601537190aaENSMUSP00000125031
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P70390 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Shox2-003ENSMUST000001624391081190aaENSMUSP00000124924
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P70390 NM_001302359
NP_001289288
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Shox2-005ENSMUST00000195261414108aaENSMUSP00000141625
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.

Gene-based displays