Description

GA repeat binding protein, beta 1 [Source:MGI Symbol;Acc:MGI:95611]

INSDC coordinates

chromosome:GRCm38:CM000995.2:126627442:126676337:1

Transcripts

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Gabpb1-001ENSMUST000001104254153383 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71137A2AQ71 A2AQ72 Q00420
NM_001271468
NP_001258397
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Gabpb1-009ENSMUST000000897453254233 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71135A2AQ71 A2AQ72 Q00420
NM_001271492
NP_001258421
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-003ENSMUST000001032272751382 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16685A2AQ71 A2AQ72 Q00420
Q3US22
NM_001271467
NP_001258396
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Gabpb1-004ENSMUST000001104242613382 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16685A2AQ71 A2AQ72 Q00420
Q3US22
NM_207669
NP_997552
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Gabpb1-002ENSMUST000000399781991347 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71136A2AQ71 A2AQ72 Q3UT69
NM_001271470
NP_001258399
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-008ENSMUST000001032261338348 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16686A2AQ71 A2AQ72 Q00420
NM_010249
NP_034379
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-007ENSMUST0000013733543946 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AQ72 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gabpb1-005ENSMUST0000012497237272 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AQ71 A2AQ72 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gabpb1-006ENSMUST00000130263423No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays