Description

GA repeat binding protein, beta 1 [Source:MGI Symbol;Acc:MGI:95611]

INSDC coordinates

chromosome:GRCm38:CM000995.2:126627442:126676337:1

About this gene

This gene has 9 transcripts (splice variants), 62 orthologues, 2 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Gabpb1-001ENSMUST000001104254153383aaENSMUSP00000106055
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71137A2AQ71 A2AQ72 Q00420
NM_001271468
NP_001258397
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Gabpb1-009ENSMUST000000897453254233aaENSMUSP00000087177
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71135A2AQ71 A2AQ72 Q00420
NM_001271492
NP_001258421
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-003ENSMUST000001032272751382aaENSMUSP00000099517
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16685A2AQ71 A2AQ72 Q00420
Q3US22
NM_001271467
NP_001258396
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
Gabpb1-004ENSMUST000001104242613382aaENSMUSP00000106054
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16685A2AQ71 A2AQ72 Q00420
Q3US22
NM_207669
NP_997552
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
Gabpb1-002ENSMUST000000399781991347aaENSMUSP00000037673
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71136A2AQ71 A2AQ72 Q3UT69
NM_001271470
NP_001258399
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-008ENSMUST000001032261338348aaENSMUSP00000099516
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16686A2AQ71 A2AQ72 Q00420
NM_010249
NP_034379
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gabpb1-007ENSMUST0000013733543946aaENSMUSP00000118358
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AQ72 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gabpb1-005ENSMUST0000012497237272aaENSMUSP00000117355
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AQ71 A2AQ72 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gabpb1-006ENSMUST00000130263423No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays