Description

cancer susceptibility candidate 5 [Source:MGI Symbol;Acc:MGI:1923714]

INSDC coordinates

chromosome:GRCm38:CM000995.2:119047119:119105501:1

About this gene

This gene has 5 transcripts (splice variants), 60 orthologues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Casc5-004ENSMUST0000002880278002119aaENSMUSP00000028802
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38203A3KGI3 A3KGI5 A3KGI6
Q9CYF0
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Casc5-201ENSMUST0000009954265252119aaENSMUSP00000097140
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38203A3KGI3 A3KGI5 A3KGI6
Q9CYF0
NM_029617
NP_083893
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Casc5-001ENSMUST0000002879955271612aaENSMUSP00000028799
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGI5 A3KGI6 Q66JQ7
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Casc5-002ENSMUST000001523801573484aaENSMUSP00000118646
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGI5 A3KGI6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Casc5-003ENSMUST0000015330037091aaENSMUSP00000120905
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGI6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays