Description

ATPase, Ca++ transporting, ubiquitous [Source:MGI Symbol;Acc:MGI:1194503]

Location
INSDC coordinates

chromosome:GRCm38:CM001004.2:72961169:72993044:1

About this gene

This gene has 7 transcripts (splice variants), 65 orthologues, 10 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Atp2a3-203ENSMUST0000016332646061026aaENSMUSP00000127036
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48842E9Q559 Q8K3Y5 NM_001163337
NP_001156809
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atp2a3-201ENSMUST0000002114245931038aaENSMUSP00000021142
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS24991Q64518 Q8K3Y5 Q91YM6
NM_016745
NP_058025
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atp2a3-202ENSMUST000001084854520999aaENSMUSP00000104125
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48843Q3U6T4 Q64518 Q8K3Y5
Q8R0X5
NM_001163336
NP_001156808
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Atp2a3-001ENSMUST0000010848645401020aaENSMUSP00000104126
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ATS5 Q8K3Y5 Q91YM6
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atp2a3-002ENSMUST000001084844467981aaENSMUSP00000104124
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ATS4 Q3U6T4 Q8K3Y5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atp2a3-004ENSMUST00000135234816No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atp2a3-003ENSMUST00000149493347No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays