Description

sorting nexin 3 [Source:MGI Symbol;Acc:MGI:1860188]

Location
INSDC coordinates

chromosome:GRCm38:CM001003.2:42502030:42535381:1

About this gene

This gene has 3 transcripts (splice variants), 65 orthologues, 3 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Snx3-001ENSMUST000000199391401162aaENSMUSP00000019939
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23812Q78ZM0 NM_017472
NP_059500
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Snx3-003ENSMUST000001054991057130aaENSMUSP00000101138
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z789 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Snx3-002ENSMUST00000105500753140aaENSMUSP00000101139
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z6Z0 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays