Description

TATA box binding protein [Source:MGI Symbol;Acc:MGI:101838]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:15499888:15528379:1

About this gene

This gene has 11 transcripts (splice variants), 69 orthologues, 2 paralogues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Tbp-001ENSMUST0000016250512794316aaENSMUSP00000124317
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37454A2T4N7 C0LUL2 D3Z453
E9Q6D9 E9Q9Z7 F8WJ67
P29037 Q6LEM2 Q6RI65
NM_013684
NP_038712
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Tbp-004ENSMUST000001175932067316aaENSMUSP00000112794
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37454A2T4N7 C0LUL2 D3Z453
E9Q6D9 E9Q9Z7 F8WJ67
P29037 Q6LEM2 Q6RI65
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Tbp-003ENSMUST000000149111891316aaENSMUSP00000014911
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37454A2T4N7 C0LUL2 D3Z453
E9Q6D9 E9Q9Z7 F8WJ67
P29037 Q6LEM2 Q6RI65
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Tbp-002ENSMUST000001180011652260aaENSMUSP00000113999
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C0LUL2 D3Z453 E9Q6D9
E9Q9Z7 Q6LEM2 Q91YM5
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Tbp-011ENSMUST00000119879967250aaENSMUSP00000114007
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C0LUL2 D3Z453 E9Q6D9
E9Q9Z7 F8WJ67 Q6LEM2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-006ENSMUST00000147081820180aaENSMUSP00000120484
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C0LUL2 D3Z453 E9Q084
E9Q6D9 E9Q9Z7 Q6LEM2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-005ENSMUST00000143924763148aaENSMUSP00000122696
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C0LUL2 D3Z453 E9Q6D9
E9Q9Z7 Q6LEM2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-008ENSMUST00000153480712208aaENSMUSP00000114471
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2T4N7 F6XYI9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-010ENSMUST00000159197685129aaENSMUSP00000125691
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z453 E9Q6D9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-007ENSMUST0000015505163976aaENSMUSP00000117551
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z453 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Tbp-009ENSMUST00000149518460No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays